1csg_gmxtopol(1) General Commands Manual csg_gmxtopol(1)
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6 csg_gmxtopol - Part of the VOTCA package
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10 csg_gmxtopol [OPTION] [OPTIONPARAMETERS]
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14 Create skeleton for gromacs topology based on atomistic topology and a
15 mapping file. File still needs to be modified by the user.
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18 Please visit the program site at __http://www.votca.org__.
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22 Allowed options:
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25 -h [ --help ]
26 display this help and exit
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28 -v [ --verbose ]
29 be loud and noisy
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31 --top arg
32 atomistic topology file
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34 --out arg
35 output topology (will create .top and in future also .itp)
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38 Mapping options:
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41 --cg arg
42 coarse graining mapping and bond definitions (xml-file)
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44 --map-ignore arg
45 list of molecules to ignore separated by ;
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47 --no-map
48 disable mapping and act on original trajectory
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52 Written and maintained by the VOTCA Development Team <devs@votca.org>
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55 This Manual Page was converted from t2t format to the this format by
56 txt2tags (http://txt2tags.org) ! The t2t file was extracted from
57 'csg_gmxtopol --help' by help2t2t (version 1.5.1 )
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61 Copyright 2009-2011 The VOTCA Development Team (http://www.votca.org)
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64 Licensed under the Apache License, Version 2.0 (the "License"); you may
65 not use this file except in compliance with the License. You may
66 obtain a copy of the License at
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69 http://www.apache.org/licenses/LICENSE-2.0
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72 Unless required by applicable law or agreed to in writing, software
73 distributed under the License is distributed on an "AS IS" BASIS, WITH‐
74 OUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
75 See the License for the specific language governing permissions and
76 limitations under the License.
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83Version: 1.5.1 2019-11-22 00:00:00 csg_gmxtopol(1)