1csg_reupdate(1) General Commands Manual csg_reupdate(1)
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6 csg_reupdate - Part of the VOTCA package
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10 csg_reupdate [OPTION] [OPTIONPARAMETERS]
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14 computes relative entropy update.
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17 Please visit the program site at __http://www.votca.org__.
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21 Allowed options:
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24 -h [ --help ]
25 display this help and exit
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27 -v [ --verbose ]
28 be loud and noisy
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30 --top arg
31 atomistic topology file (only needed for RE update)
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33 RE Specific options:
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35 --options arg
36 options file for coarse graining
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38 --gentable arg (=0)
39 only generate potential tables from given parameters, NO RE
40 update!
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42 --interaction arg
43 [OPTIONAL] generate potential tables only for the specified
44 interactions, only valid when 'gentable' is true
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46 --param-in-ext arg (=param.cur)
47 Extension of the input parameter tables
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49 --param-out-ext arg (=param.new)
50 Extension of the output parameter tables
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52 --pot-out-ext arg (=pot.new)
53 Extension of the output potential tables
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55 --hessian-check arg (=1)
56 Extension of the output potential tables
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59 Threading options:
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62 --nt arg (=1)
63 number of threads
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66 Trajectory options:
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69 --trj arg
70 atomistic trajectory file
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72 --begin arg (=0)
73 skip frames before this time (only works for Gromacs files)
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75 --first-frame arg (=0)
76 start with this frame
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78 --nframes arg
79 process the given number of frames
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83 Written and maintained by the VOTCA Development Team <devs@votca.org>
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86 This Manual Page was converted from t2t format to the this format by
87 txt2tags (http://txt2tags.org) ! The t2t file was extracted from
88 'csg_reupdate --help' by help2t2t (version 1.5 )
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92 Copyright 2009-2011 The VOTCA Development Team (http://www.votca.org)
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95 Licensed under the Apache License, Version 2.0 (the "License"); you may
96 not use this file except in compliance with the License. You may
97 obtain a copy of the License at
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100 http://www.apache.org/licenses/LICENSE-2.0
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103 Unless required by applicable law or agreed to in writing, software
104 distributed under the License is distributed on an "AS IS" BASIS, WITH‐
105 OUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
106 See the License for the specific language governing permissions and
107 limitations under the License.
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114Version: 1.5 2019-02-17 00:15:52 csg_reupdate(1)