1csg_reupdate(1) General Commands Manual csg_reupdate(1)
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6 csg_reupdate - Part of the VOTCA package
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9 csg_reupdate [OPTION] [OPTIONPARAMETERS]
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12 computes relative entropy update.
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14 Please visit the program site at __http://www.votca.org__.
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17 Allowed options:
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20 -h [ --help ]
21 display this help and exit
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23 --verbose
24 be loud and noisy
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26 --verbose1
27 be very loud and noisy
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29 -v [ --verbose2 ]
30 be extremly loud and noisy
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32 --top arg
33 atomistic topology file (only needed for RE update)
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35 RE Specific options:
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37 --options arg
38 options file for coarse graining
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40 --gentable arg (=0)
41 only generate potential tables from given parameters, NO RE
42 update!
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44 --interaction arg
45 [OPTIONAL] generate potential tables only for the specified
46 interactions, only valid when 'gentable' is true
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48 --param-in-ext arg (=param.cur)
49 Extension of the input parameter tables
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51 --param-out-ext arg (=param.new)
52 Extension of the output parameter tables
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54 --pot-out-ext arg (=pot.new)
55 Extension of the output potential tables
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57 --hessian-check arg (=1)
58 Disable the hessian check (mostly for testing)
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61 Threading options:
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64 --nt arg (=1)
65 number of threads
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68 Trajectory options:
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71 --trj arg
72 atomistic trajectory file
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74 --begin arg (=0)
75 skip frames before this time (only works for Gromacs files)
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77 --first-frame arg (=0)
78 start with this frame
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80 --nframes arg
81 process the given number of frames
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85 Written and maintained by the VOTCA Development Team <devs@votca.org>
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87 This Manual Page was converted from t2t format to the this format by
88 txt2tags (http://txt2tags.org) ! The t2t file was extracted from
89 'csg_reupdate --help' by help2t2t (version 2021 )
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92 Copyright 2009-2011 The VOTCA Development Team (http://www.votca.org)
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94 Licensed under the Apache License, Version 2.0 (the "License"); you may
95 not use this file except in compliance with the License. You may
96 obtain a copy of the License at
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98 http://www.apache.org/licenses/LICENSE-2.0
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100 Unless required by applicable law or agreed to in writing, software
101 distributed under the License is distributed on an "AS IS" BASIS, WITH‐
102 OUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
103 See the License for the specific language governing permissions and
104 limitations under the License.
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109Version: 2021 2021-03-13 00:00:00 csg_reupdate(1)