1GDCMGENDIR(1) DICOM Manipulation. GDCMGENDIR(1)
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6 gdcmgendir - Tool to generate a DICOMDIR file from a File-Set.
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9 gdcmgendir [options] file-in file-out
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13 file-in DICOM input filename
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15 file-out DICOM output filename
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18 Parameters
19 specific options
20 -i --input DICOM filename or directory
21 -o --output DICOM filename or directory
22 -r --recursive recursive.
23 --descriptor descriptor.
24 --root-uid Root UID.
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26 general options
27 -h --help
28 print this help text and exit
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30 -v --version
31 print version information and exit
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33 -V --verbose
34 verbose mode (warning+error).
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36 -W --warning
37 warning mode, print warning information
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39 -E --error
40 error mode, print error information
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42 -D --debug
43 debug mode, print debug information
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45 environment variable
46 GDCM_ROOT_UID Root UID
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50 One may have to run some preliminary steps in order to get gdcmgendir
51 to generate the DICOMDIR file. Namely two steps:
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53 · Batch renaming of the DICOM filename into something compatible with
54 ISO 9660 filename convention
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56 · Convert all DICOM file into the Explicit VR Little Endian
57 Uncompressed (1.2.840.10008.1.2.1)
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59 Step 1. can be solved in a numerous way. Eg. on UNIX environment this
60 could either be solved using the mkisofs command line tool. Filenames
61 should not contains any extension since the VR CS does not allow for
62 the '.' character. Only upper case, digit 0-9, the space ' ' and the
63 underscore '_' character are valid in VR CS, with a maximum of 8 bytes.
64 Another simple tool that can be handy is 'rename' in conjunction with
65 'basename'.
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67 Step 2. can simply be achieved using the gdcmconv command line tool:
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69 $ for i in `ls IMG*`; do gdcmconv --raw --force $i /tmp/out/$i; done
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72 gdcmconv(1), gdcmanon(1), rename(1), mkisofs(1)
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75 Mathieu Malaterre
76 Main developer
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79 Copyright © 2006, 2011 Mathieu Malaterre
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83GDCM 2.8.8 02/28/2019 GDCMGENDIR(1)