1csg_density(1)              General Commands Manual             csg_density(1)
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NAME

6       csg_density - Part of the VOTCA package
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SYNOPSIS

10       csg_density [OPTION] [OPTIONPARAMETERS]
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DESCRIPTION

14       Calculates  the  mass  density  distribution along a box axis or radial
15       density profile from reference point
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18       Please visit the program site at __http://www.votca.org__.
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OPTIONS

22       Allowed options:
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25       -h [ --help ]
26              produce this help message
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28       --top arg
29              atomistic topology file
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32       Mapping options:
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35       --cg arg
36              [OPTIONAL] coarse graining mapping definitions (xml-file). If no
37              file is given, program acts on original trajectory
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40       Specific options::
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43       --axis arg (=r)
44              [x|y|z|r] density axis (r=spherical)
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46       --bins arg (=50)
47              bins
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49       --out arg
50              Output file
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52       --rmax arg
53              rmax (default for [r] =min of all box vectors/2, else l )
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55       --scale arg (=1)
56              scale factor for the density
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58       --molname arg (=*)
59              molname
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61       --filter arg (=*)
62              filter bead names
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64       --ref arg
65              reference zero point
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68       Trajectory options:
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71       --trj arg
72              atomistic trajectory file
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74       --begin arg (=0)
75              skip frames before this time
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77       --first-frame arg (=0)
78              start with this frame
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80       --nframes arg
81              process the given number of frames
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AUTHORS

85       Written and maintained by the VOTCA Development Team <devs@votca.org>
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88       This  Manual  Page  was converted from t2t format to the this format by
89       txt2tags (http://txt2tags.org) !   The  t2t  file  was  extracted  from
90       'csg_density --help' by help2t2t (version 1.2.1 )
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94       Copyright 2009-2011 The VOTCA Development Team (http://www.votca.org)
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97       Licensed under the Apache License, Version 2.0 (the "License"); you may
98       not use this file except in  compliance  with  the  License.   You  may
99       obtain a copy of the License at
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102           http://www.apache.org/licenses/LICENSE-2.0
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105       Unless  required  by  applicable  law or agreed to in writing, software
106       distributed under the License is distributed on an "AS IS" BASIS, WITH‐
107       OUT  WARRANTIES  OR  CONDITIONS OF ANY KIND, either express or implied.
108       See the License for the specific  language  governing  permissions  and
109       limitations under the License.
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116Version: 1.2.1           Thu Aug 25 20:00:28 UTC 2011           csg_density(1)
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