1csg_density(1)              General Commands Manual             csg_density(1)
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NAME

6       csg_density - Part of the VOTCA package
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SYNOPSIS

10       csg_density [OPTION] [OPTIONPARAMETERS]
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DESCRIPTION

14       Calculates  the  mass  density  distribution along a box axis or radial
15       density profile from reference point
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18       Please visit the program site at __http://www.votca.org__.
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OPTIONS

22       Allowed options:
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25       -h [ --help ]
26              display this help and exit
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28       -v [ --verbose ]
29              be loud and noisy
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31       --top arg
32              atomistic topology file
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35       Mapping options:
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38       --cg arg
39              [OPTIONAL]  coarse  graining  mapping   and   bond   definitions
40              (xml-file).  If  no file is given, program acts on original tra‐
41              jectory
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43       --map-ignore arg
44              list of molecules to ignore if mapping is done separated by ;
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47       Specific options::
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50       --type arg (=mass)
51              density type: mass or number
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53       --axis arg (=r)
54              [x|y|z|r] density axis (r=spherical)
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56       --step arg (=0.01)
57              spacing of density
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59       --block-length arg
60              write blocks of this length,  the  averages  are  cleared  after
61              every write
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63       --out arg
64              Output file
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66       --rmax arg
67              rmax (default for [r] =min of all box vectors/2, else l )
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69       --scale arg (=1)
70              scale factor for the density
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72       --molname arg (=*)
73              molname
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75       --filter arg (=*)
76              filter bead names
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78       --ref arg
79              reference zero point
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82       Trajectory options:
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85       --trj arg
86              atomistic trajectory file
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88       --begin arg (=0)
89              skip frames before this time (only works for Gromacs files)
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91       --first-frame arg (=0)
92              start with this frame
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94       --nframes arg
95              process the given number of frames
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AUTHORS

99       Written and maintained by the VOTCA Development Team <devs@votca.org>
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102       This  Manual  Page  was converted from t2t format to the this format by
103       txt2tags (http://txt2tags.org) !   The  t2t  file  was  extracted  from
104       'csg_density --help' by help2t2t (version 1.5 )
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108       Copyright 2009-2011 The VOTCA Development Team (http://www.votca.org)
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111       Licensed under the Apache License, Version 2.0 (the "License"); you may
112       not use this file except in  compliance  with  the  License.   You  may
113       obtain a copy of the License at
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116           http://www.apache.org/licenses/LICENSE-2.0
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119       Unless  required  by  applicable  law or agreed to in writing, software
120       distributed under the License is distributed on an "AS IS" BASIS, WITH‐
121       OUT  WARRANTIES  OR  CONDITIONS OF ANY KIND, either express or implied.
122       See the License for the specific  language  governing  permissions  and
123       limitations under the License.
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130Version: 1.5                  2019-02-05 19:06:33               csg_density(1)
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